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Summary statistics of the 18 Medicago genomes, taken from the Supplementary Tables of the super-pangenome study. Species names in black are genomes assembled in this study; names in grey are previously published genomes. Hover over a bar for exact values.
Genes of each genome assigned by orthogroup prevalence: core (present in all 18 genomes), softcore (15–17), dispensable (2–14) and private (1). Unclustered genes were not assigned to any orthogroup.
Left: proportion of each genome occupied by LTR/Copia, LTR/Gypsy and unclassified LTR retrotransposons. Right: numbers of intact (full-length) LTR retrotransposons by superfamily and the ratio of solo LTRs to intact elements (line, right axis); a high ratio indicates frequent removal by unequal recombination.
SVs (≥50 bp) of the 17 genomes called against the M. sativa subsp. caerulea reference: by type (top) and by position relative to genes (bottom; 2-kb flanks).
Proportion of each genome occupied by each repeat class; the line shows total repeat content.